Package: brainKCCA 0.1.0

brainKCCA: Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis

It is designed to calculate connection between (among) brain regions and plot connection lines. Also, the summary function is included to summarize group-level connectivity network. Kang, Jian (2016) <doi:10.1016/j.neuroimage.2016.06.042>.

Authors:Xubo Yue [aut], Jian Kang [cre]

brainKCCA_0.1.0.tar.gz
brainKCCA_0.1.0.zip(r-4.7-any)brainKCCA_0.1.0.zip(r-4.6-any)brainKCCA_0.1.0.zip(r-4.5-any)
brainKCCA_0.1.0.tgz(r-4.6-any)brainKCCA_0.1.0.tgz(r-4.5-any)
brainKCCA_0.1.0.tar.gz(r-4.7-any)brainKCCA_0.1.0.tar.gz(r-4.6-any)
brainKCCA_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
brainKCCA/json (API)

# Install 'brainKCCA' in R:

install.packages('brainKCCA', repos = c('https://kangjian2016.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kangjian2016/brainkcca/issues

Datasets:

input_img - This is data to be included as example

On CRAN:

3.70 score 5 scripts 344 downloads 7 exports 79 dependencies

Last updated from:3ad10ab7d0. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	150
source / vignettes	OK	272
linux-release	NOTE	167
macos-release	NOTE	225
macos-oldrel	NOTE	173
windows-devel	NOTE	93
windows-release	NOTE	88
windows-oldrel	NOTE	94
wasm-release	OK	143

Exports:meanConnection multipleRegion_plot nii2RData perm_kCCA perm_kCCA_par permkCCA_multipleRegion summary_kcca

Dependencies:abind ash base64enc bitops brainR bslib cachem CCA cli cluster colorspace cpp11 deSolve digest dotCall64 elasticnet evaluate farver fastmap fda fds fields FNN fontawesome fs ggplot2 glue gtable hdrcde highr htmltools htmlwidgets isoband jquerylib jsonlite kernlab KernSmooth knitr ks labeling lars lattice lifecycle locfit magrittr maps MASS Matrix mclust memoise mgcv mime misc3d multicool mvtnorm nlme oro.nifti pcaPP pracma R6 rainbow rappdirs RColorBrewer Rcpp RCurl rgl rlang rmarkdown RNifti S7 sass scales spam tinytex vctrs viridisLite withr xfun yaml

Examples to build region-level connectivity network

Vignette Info

Rendered frombrainKCCA.Rmdusingknitr::rmarkdown

Last update: 2019-05-02
Started: 2019-05-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
This is data to be included as example	input_img
Calculate percentage of connection in all pairwise brain regions.	meanConnection
Multiple Regions Connection Plot	multipleRegion_plot
Read NIfTI Image(s) File(s) into R data	nii2RData
Calculation of Strength of the Connectivity among Multiple Brain Regions	perm_kCCA perm_kCCA_par
Calculation of Strength of the Connectivity among multiple Brain Regions	permkCCA_multipleRegion
Print information of object generated by permkCCA_multipleRegion function	summary_kcca